species:   Clros
pid:       PID1838
parent:    cro-mir-4
paralog:   
locus:     CADEHS020000005.2:590451-590536
matures:   ['UCAGCCUCGAGACUUUGCC', 'CAAAGUCUCGAGGCUAAG']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000005.2:590451-590536

118 out of bounds
1446 alignments
187 proper strand
155 stranded perfect matches

*******************                                              ******************** 
UCAGCCUCGAGACUUUGCCGGAUAGCUUUGUUUUCUUUACGGCGAAAAAGAAAAAGAAUAUAUCCUGCAAAGUCUCGAGGCUAAGC
..((((((((((((((((.(((((..(((.((((((((........)))))))).)))..))))).))))))))))))))))....
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=122 c
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 c*
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=122 ma
-------------------------------------------------------------------CAAAGUCUCGAGGCUAAG- l=18 a=0 ma*

----------------------------------------------------------------CUGCAAAGUCUCGAGGCUAAGC l=22 a=2 
----------------------------------------------------------UAUAUCCUGCAAAGUCUCGA-------- l=20 a=1 
----------------------------------------------------------UAUAUCCUGCAAAGUCUCGAGGCU---- l=24 a=2 
-----CUCGAGACUUUGCCGGAUAGCUU---------------------------------------------------------- l=23 a=1 
---GCCUCGAGACUUUGCCGGAUAGCUU---------------------------------------------------------- l=25 a=1 
-CAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=18 a=4 
-CAGCCUCGAGACUUUGCCa------------------------------------------------------------------ l=19 a=2 
-CAGCCUCGAGACUUUGCCG------------------------------------------------------------------ l=19 a=1 
-CAGCCUCGAGACUUUGCCGGA---------------------------------------------------------------- l=21 a=1 
UCAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=18 a=16 
UCAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=122 (c,ma)
UuAGCCUCGAGACUUUGCC------------------------------------------------------------------- l=19 a=27 
UCAGCCUCGAGACUUUGCCG------------------------------------------------------------------ l=20 a=3 
UCAGCCUCGAGACUUUGCCa------------------------------------------------------------------ l=20 a=1 
UCAGCCUCGAGACUUUGCCGa----------------------------------------------------------------- l=21 a=1 
UCAGCCUCGAGACUUUGCCGG----------------------------------------------------------------- l=21 a=1 
UCAGCCUCGAGACUUUGCCGc----------------------------------------------------------------- l=21 a=1 

mb-01111
ax-1011001
ku-11
ss-101011011100
fn-101
